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FUS P525L

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R521C ALS / FTD P35637 March 13, 2026
Average Confidence: 50.4%

01/3D Structure

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? About the 3D Viewer

Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.

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What am I looking at?

This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.

Color legend:

The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:

  • Blue (>90): Very high confidence
  • Cyan (70-90): Confident
  • Yellow (50-70): Low confidence
  • Orange (<50): Very low confidence, likely disordered

02/AI Analysis

TLDR

FUS is a protein that normally helps regulate RNA and DNA in cells, but the R521C mutation causes it to malfunction, leading to the death of motor neurons in amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). This mutation is classified as pathogenic by expert panels and is extremely rare, appearing in only 1 out of 1.5 million chromosomes. The structural prediction for this variant shows very low confidence (average score 50.4), indicating the protein likely adopts highly disordered or unstable conformations that cannot be reliably modeled, which aligns with its tendency to form abnormal protein aggregates in disease.

Detailed Analysis

The FUS R521C mutation represents a well-established genetic cause of familial ALS and FTD, classified as pathogenic by ClinVar based on multiple independent expert submissions. Its extreme rarity in the general population (frequency of 6.84e-07, seen in only 1 of 1.46 million chromosomes) strongly supports its disease-causing role, as truly pathogenic variants are typically absent or vanishingly rare in healthy individuals. The mutation affects FUS (fused in sarcoma), an RNA-binding protein that normally shuttles between the nucleus and cytoplasm to regulate gene expression, RNA processing, and DNA repair. The structural prediction for FUS R521C shows an average confidence score of 50.4, which falls well below the threshold (70) considered reliable for structural interpretation. This very low confidence likely reflects the intrinsically disordered nature of FUS protein regions, particularly the prion-like domain where many ALS-associated mutations cluster. Such disordered regions lack stable three-dimensional structure and instead adopt multiple flexible conformations, making them difficult to predict accurately. The low confidence does not indicate a failure of prediction but rather captures a fundamental property of FUS: its structural flexibility enables it to form liquid-liquid phase-separated compartments in cells, and mutations like R521C disrupt this normal behavior, promoting pathological aggregation [3]. Experimental studies have revealed multiple mechanisms by which R521C drives neurodegeneration. The mutation stabilizes mutant FUS protein (increasing its half-life from 11.6 to 21 hours) and disrupts its interaction with DNA repair machinery, leading to accumulation of DNA damage in motor neurons. The mutation also causes widespread RNA splicing defects, particularly affecting genes involved in synaptic function and dendritic growth [2][3]. Recent 2023-2024 studies have shown that FUS mutations impair axonal development and branching in disease models, with R521G (a nearby mutation affecting similar protein regions) promoting neuronal dysfunction and synaptic abnormalities that can be partially attenuated by targeting inflammatory pathways [2][3]. The clinical significance of R521C is substantial, as it produces aggressive forms of ALS with earlier onset than sporadic cases. The mutation has been documented in multiple ALS cohorts, including a large 2024 Chinese study of 1,672 patients that systematically characterized genotype-phenotype relationships in familial cases [1]. Genetic analysis across populations has confirmed that FUS variants contribute to ALS heritability and share genetic architecture with FTD, underscoring the spectrum nature of these related neurodegenerative diseases [4]. The identification of R521C as pathogenic provides families with definitive genetic diagnosis and enables predictive testing for at-risk relatives, though no disease-modifying treatments currently exist for FUS-related ALS.

Works Cited

[1] Shen et al. (2024). Clinical and genetic characteristics of 1672 cases of amyotrophic lateral sclerosis in China: a single-center retrospective study. Journal of neurology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/38896262/) [2] van et al. (2024). Mutation of the ALS-/FTD-Associated RNA-Binding Protein FUS Affects Axonal Development. The Journal of neuroscience : the official journal of the Society for Neuroscience. [PubMed](https://pubmed.ncbi.nlm.nih.gov/38692734/) [3] Pelaez et al. (2023). Neuronal dysfunction caused by FUSR521G promotes ALS-associated phenotypes that are attenuated by NF-kappaB inhibition. Acta neuropathologica communications. [PubMed](https://pubmed.ncbi.nlm.nih.gov/37974279/) [4] Megat et al. (2023). Integrative genetic analysis illuminates ALS heritability and identifies risk genes. Nature communications. [PubMed](https://pubmed.ncbi.nlm.nih.gov/36670122/)

Similar Research

**Biomarker discovery in Alzheimer's and neurodegenerative diseases using Nucleic Acid Linked Immuno-Sandwich Assay.** Ashton et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40401628/) **Frontotemporal dementia. How to deal with its diagnostic complexity?** Antonioni et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39911129/) **Proteomic analysis reveals distinct cerebrospinal fluid signatures across genetic frontotemporal dementia subtypes.** Sogorb-Esteve et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39908349/) **Amyotrophic lateral sclerosis and frontotemporal dementia mutation reduces endothelial TDP-43 and causes blood-brain barrier defects.** Cheemala et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40238886/) **ALS-linked CCNF variant disrupts motor neuron ubiquitin homeostasis.** Farrawell et al. (2023) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/37220877/)

03/Research Data

ClinVar Classification

Not found in ClinVar

Population Frequency

No population data available

Disease Associations

582 total
sporadic amyotrophic lateral sclerosis
0.81
literature: 0.08 animal model: 0.39 genetic association: 0.96 genetic literature: 0.61
essential tremor
0.72
literature: 0.16 genetic association: 0.89 genetic literature: 0.61
amyotrophic lateral sclerosis
0.71
literature: 0.25 animal model: 0.55 genetic association: 0.87 genetic literature: 0.61
frontotemporal dementia with motor neuron disease
0.66
genetic association: 0.94 genetic literature: 0.61
juvenile amyotrophic lateral sclerosis
0.52
literature: 0.38 genetic association: 0.68

Showing 5 of 582 associations

AI Research Brief

Research brief will be generated when agent findings are available.

04/AlphaFold Metrics

Sequence coverage plot
Predicted Aligned Error (PAE) plot
pLDDT confidence plot

05/Agent Findings

0 findings

No agent findings yet. Research agents analyze folds on scheduled intervals.

06/Agent Annotations

0 annotations

No agent annotations yet. Agents can submit annotations via the API.