01/3D Structure
? About the 3D Viewer
Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.
Controls:
- Rotate: Click and drag
- Zoom: Scroll wheel or pinch
- Pan: Right-click and drag (or two-finger drag)
- Reset: Double-click to reset view
What am I looking at?
This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.
Color legend:
The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:
- Blue (>90): Very high confidence
- Cyan (70-90): Confident
- Yellow (50-70): Low confidence
- Orange (<50): Very low confidence, likely disordered
02/AI Analysis
TLDR
This analysis examines FUS protein containing the P525L mutation, which is linked to aggressive forms of ALS and frontotemporal dementia. The AlphaFold prediction shows predominantly low structural confidence (average pLDDT 50.3), with only 23% of residues reaching high confidence, reflecting FUS's intrinsically disordered nature. This disorder is actually critical for FUS's normal function in RNA processing and stress response, but the P525L mutation disrupts proper cellular localization, causing toxic protein accumulation in motor neurons that leads to neurodegeneration.
Detailed Analysis
03/Research Data
ClinVar Classification
Not found in ClinVar
Population Frequency
No population data available
Disease Associations
911 totalShowing 5 of 911 associations
AI Research Brief
04/AlphaFold Metrics
05/Domain Annotations
Structural Domains & Regions
Binding Partners
Gene Ontology
06/Structural Caption
FUS P525L variant shows predominantly disordered structure with high-confidence RRM and RanBP2 domains; C-terminal mutation may disrupt phase separation dynamics in intrinsically disordered region.
Average pLDDT of 50.3 with only 23% high-confidence residues indicates a predominantly low-confidence structure. The RRM domain (residues 285-371) and RanBP2-type domain (residues 422-453) likely represent the only regions with elevated confidence, while extensive disordered regions spanning residues 1-286, 375-424, and 444-526 show poor structural prediction.
The two structured domains (RRM and RanBP2-type) align with the limited high-confidence regions, while the majority of the protein consists of intrinsically disordered regions enriched in low-complexity sequences, glycine-rich stretches, and polar/charged residues that are inherently difficult to model confidently.
The P525L mutation occurs in the C-terminal disordered region (residues 511-526) enriched in basic and acidic residues. This proline-to-leucine substitution may alter the local conformational flexibility and liquid-liquid phase separation properties critical for FUS function in stress granules and RNA processing.
07/Peptide Therapeutics
Aggregation Analysis
Aggregation propensity analysis identifies 1 hotspots (average score: -0.18) using Pawar+KyteDoolittle+charge algorithm.
08/Known Inhibitors
No known inhibitors found. Run peptide agent to search literature.
09/Candidate Peptides
De Novo Peptide Design Pipeline
Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.
Loading candidate statistics...
Sequences are withheld pending IP review. Full candidate data (sequences,
scores, CIF files) is available to authorized reviewers via the
/api/private/candidates/{fold_id} endpoint with
X-Private-Key.
Legacy candidates (charge-complementary)
Target Region
Residues 307–311 (0.54 aggregation score)Candidate ID
CP-FUS-001
(7 residues · computational design)
10/Agent Findings
Literature Agent (1)
None of the provided papers are relevant to the FUS P525L protein variant or its association with ALS/FTD. The papers cover topics including gull diet analysis, epithelial morphogenesis, protein conformational modeling, CT phantom development, and precision health research survey design, none of which address FUS mutations, amyotrophic lateral sclerosis, or frontotemporal dementia.
Clinical Agent (1)
No summary available
Structural Agent (1)
AlphaFold structure update: Baseline check: 2 structure(s) found
Supplements Agent (1)
The therapeutic landscape for FUS P525L in ALS/FTD shows preclinical research exploring peptide-based approaches to disrupt toxic beta-sheet formation and autophagy-inducing compounds, but no active clinical trials testing supplements or peptides. The research is entirely at the preclinical stage, with structural biology and disease modeling work suggesting potential targets but no translation to human intervention trials yet.
Synthesis Agent (1)
Synthesis of 5 findings (clinical, literature, peptides, structural, supplements): The FUS P525L variant represents a compelling therapeutic target with emerging evidence for peptide-...
Peptide Agent (1)
FUS P525L: 1 candidate peptides designed