01/3D Structure
? About the 3D Viewer
Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.
Controls:
- Rotate: Click and drag
- Zoom: Scroll wheel or pinch
- Pan: Right-click and drag (or two-finger drag)
- Reset: Double-click to reset view
What am I looking at?
This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.
Color legend:
The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:
- Blue (>90): Very high confidence
- Cyan (70-90): Confident
- Yellow (50-70): Low confidence
- Orange (<50): Very low confidence, likely disordered
02/AI Analysis
TLDR
TAU is a protein that normally helps stabilize the cellular scaffolding in brain cells, but in Alzheimer's disease it forms toxic tangles. This study used computer modeling (AlphaFold2) to predict the 3D structure of a variant called V337M, which changes one building block in the protein. The very low confidence score (55.0) indicates that this variant likely makes the protein highly disordered and flexible—a state that may promote the abnormal clumping seen in Alzheimer's disease.
Detailed Analysis
Works Cited
Similar Research
03/Research Data
ClinVar Classification
Review: criteria provided, multiple submitters
Last evaluated: 2026-01-01
Population Frequency
No population data available
Disease Associations
3349 totalShowing 5 of 3349 associations
AI Research Brief
Research brief will be generated when agent findings are available.
04/AlphaFold Metrics
05/Domain Annotations
Structural Domains & Regions
Binding Partners
Gene Ontology
06/Structural Caption
TAU V337M variant shows characteristic intrinsic disorder (average pLDDT 55.0) with the microtubule-binding domain representing the primary structured element among predominantly disordered regions.
Average pLDDT of 55.0 with only 19% (68/352) high-confidence residues indicates a predominantly disordered protein. The microtubule-binding domain (residues 561-685) shows relatively higher confidence, while N-terminal and flanking regions remain highly destabilized.
The four tandem Tau/MAP repeats (residues 561-685) constitute the microtubule-binding domain and represent the most structured region. Extensive disordered regions (residues 1-573, 715-734) and low complexity segments align with the low overall confidence, consistent with Tau's intrinsically disordered nature.
The V337M mutation occurs within a low complexity region (residues 324-340) outside the microtubule-binding domain. This methionine substitution in an already disordered segment likely has minimal impact on the limited structural elements present, though it may affect aggregation propensity.
07/Peptide Therapeutics
Aggregation Analysis
Aggregation propensity analysis identifies 1 hotspots (average score: -0.19) using Pawar+KyteDoolittle+charge algorithm.
08/Known Inhibitors
Known Binders from ChEMBL
09/Candidate Peptides
De Novo Peptide Design Pipeline
Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.
Loading candidate statistics...
Sequences are withheld pending IP review. Full candidate data (sequences,
scores, CIF files) is available to authorized reviewers via the
/api/private/candidates/{fold_id} endpoint with
X-Private-Key.
Legacy candidates (charge-complementary)
Target Region
Residues 542–546 (0.60 aggregation score)Candidate ID
CP-TAU-001
(7 residues · computational design)
10/Agent Findings
Literature Agent (1)
None of the provided papers directly address the TAU V337M variant specifically. While several papers discuss tau pathology mechanisms, genetic risk factors, and biomarkers relevant to Alzheimer's disease pathogenesis, they focus on other variants (P301L, PSEN1 mutations, APOE variants, PRNP variants) or general tau biology. These papers provide contextual understanding of tau-mediated neurodegeneration but do not offer specific insights into the V337M variant's pathogenic mechanisms or clinical associations.
Clinical Agent (1)
No summary available
Structural Agent (1)
AlphaFold structure update: Baseline check: 9 structure(s) found
Supplements Agent (1)
The therapeutic landscape for TAU V337M in AD includes primarily nutritional supplements (melatonin, tricaprilin) being tested in Phase 2-3 trials for their effects on tau biomarkers and cognition, alongside emerging peptide-based approaches. High-throughput screening and peptide engineering studies have identified cyclic peptides and small molecules that target tau interactions (tau-LRP1, CAPON) and tau seeding (PHF6 peptide), though these remain in preclinical stages. The BCG vaccine trial represents an immunomodulatory approach targeting AD biomarkers including tau, while silkworm pupa powder trials test protein-rich nutritional interventions.
Synthesis Agent (1)
Synthesis of 5 findings (clinical, literature, peptides, structural, supplements): The TAU V337M variant associated with Alzheimer's disease presents a multifaceted therapeutic landsc...
Peptide Agent (1)
TAU V337M: 10 known binders (top: 0.5 nM); 1 candidate peptides designed