01/3D Structure
? About the 3D Viewer
Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.
Controls:
- Rotate: Click and drag
- Zoom: Scroll wheel or pinch
- Pan: Right-click and drag (or two-finger drag)
- Reset: Double-click to reset view
What am I looking at?
This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.
Color legend:
The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:
- Blue (>90): Very high confidence
- Cyan (70-90): Confident
- Yellow (50-70): Low confidence
- Orange (<50): Very low confidence, likely disordered
02/AI Analysis
TLDR
FUS is a protein essential for RNA processing in neurons, and the R521C mutation causes a severe inherited form of ALS and frontotemporal dementia by disrupting the protein's normal cellular location. AlphaFold2 modeling of R521C shows an average confidence of 50.4%, indicating the structure is largely disordered and difficult to predict reliably, which aligns with FUS's known behavior as a protein that lacks stable three-dimensional structure in many regions. This variant is extremely rare (found in only 1 out of 1.5 million chromosomes tested) and classified as definitively disease-causing by expert clinical panels.
Detailed Analysis
Works Cited
Similar Research
03/Research Data
ClinVar Classification
Review: criteria provided, multiple submitters
Last evaluated: 2026-01-01
Population Frequency
6.84e-07
Extremely rare (<0.01%)
AC: 1 / AN: 1461560
Disease Associations
911 totalShowing 5 of 911 associations
AI Research Brief
04/AlphaFold Metrics
05/Domain Annotations
Structural Domains & Regions
Binding Partners
Gene Ontology
06/Structural Caption
FUS R521C shows predominantly disordered structure with confined folding in RRM and RanBP2 domains; C-terminal variant disrupts basic residue cluster in disordered RNA-binding region.
Average pLDDT of 50.4 with only 23% high-confidence residues (119/526), indicating a predominantly disordered protein. The RRM domain (residues 285-371) and RanBP2-type domain (residues 422-453) likely represent the primary structured regions.
High-confidence regions correspond to the folded RRM and RanBP2-type domains, while extensive disordered annotations (residues 1-286, 375-424, 444-526) with glycine-rich and low-complexity segments align with low pLDDT scores throughout the N-terminus and C-terminus.
The R521C mutation occurs in the disordered C-terminal region (residues 511-526), replacing a basic arginine with a cysteine near the protein terminus, potentially disrupting electrostatic interactions or RNA-binding properties in this intrinsically disordered segment implicated in ALS pathogenesis.
07/Peptide Therapeutics
Aggregation Analysis
Aggregation propensity analysis identifies 1 hotspots (average score: -0.18) using Pawar+KyteDoolittle+charge algorithm.
08/Known Inhibitors
Known Binders from ChEMBL
09/Candidate Peptides
De Novo Peptide Design Pipeline
Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.
Loading candidate statistics...
Sequences are withheld pending IP review. Full candidate data (sequences,
scores, CIF files) is available to authorized reviewers via the
/api/private/candidates/{fold_id} endpoint with
X-Private-Key.
Legacy candidates (charge-complementary)
Target Region
Residues 307–311 (0.54 aggregation score)Candidate ID
CP-FUS-001
(7 residues · computational design)
10/Agent Findings
Literature Agent (1)
These papers have no relevance to understanding the FUS R521C variant associated with ALS/FTD. The collection addresses entirely different medical domains including cerebrovascular disease, dementia prediction algorithms, viral hepatitis immunotherapy, and peripheral vascular physiology, with no overlap to FUS protein biology, RNA-binding protein dysfunction, or motor neuron/frontotemporal degeneration.
Clinical Agent (1)
No summary available
Structural Agent (1)
AlphaFold structure update: Baseline check: 2 structure(s) found
Supplements Agent (1)
No supplement, peptide, or nutritional intervention trials or preprints were identified specifically targeting FUS R521C in ALS/FTD. The clinical trials identified are observational natural history studies without therapeutic interventions. The preprints focus on basic science mechanisms of FUS protein aggregation, condensate formation, and structural biology, but none describe supplement or peptide therapeutic development for this specific variant.
Synthesis Agent (1)
Synthesis of 5 findings (clinical, literature, peptides, structural, supplements): The FUS R521C variant represents a moderate-severity mutation in the PY-NLS domain that disrupts nuc...
Peptide Agent (1)
FUS R521C: 2 known binders (top: 17.5 nM); 1 candidate peptides designed