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FUS R521C

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R521C ALS / FTD P35637 July 08, 2026
Average Confidence: 50.4%

01/3D Structure

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? About the 3D Viewer

Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.

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What am I looking at?

This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.

Color legend:

The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:

  • Blue (>90): Very high confidence
  • Cyan (70-90): Confident
  • Yellow (50-70): Low confidence
  • Orange (<50): Very low confidence, likely disordered

02/AI Analysis

TLDR

FUS is a protein essential for RNA processing in neurons, and the R521C mutation causes a severe inherited form of ALS and frontotemporal dementia by disrupting the protein's normal cellular location. AlphaFold2 modeling of R521C shows an average confidence of 50.4%, indicating the structure is largely disordered and difficult to predict reliably, which aligns with FUS's known behavior as a protein that lacks stable three-dimensional structure in many regions. This variant is extremely rare (found in only 1 out of 1.5 million chromosomes tested) and classified as definitively disease-causing by expert clinical panels.

Detailed Analysis

FUS (Fused in Sarcoma) is an RNA-binding protein critical for RNA metabolism in motor neurons, and mutations in FUS account for approximately 3-5% of familial ALS cases [3]. The R521C variant occurs in the C-terminal nuclear localization signal (NLS) region, which normally directs FUS into the cell nucleus where it performs its RNA processing functions [8]. Pathogenic mutations in this region, including R521C, disrupt nuclear import and cause FUS to accumulate abnormally in the cytoplasm, forming toxic aggregates that contribute to motor neuron death [7][8]. This variant shows incomplete penetrance, meaning not all carriers will develop disease, though those who do typically experience aggressive progression [3]. The AlphaFold2 structural prediction for FUS R521C yields an average confidence score (pLDDT) of 50.4%, which falls well below the threshold of 70% typically required for reliable structural interpretation. This low confidence reflects FUS's intrinsically disordered nature—large portions of the protein lack stable three-dimensional structure and exist as flexible chains rather than compact folds. The N-terminal region of FUS contains a low-complexity prion-like domain that remains disordered even under normal conditions, while the C-terminal region containing R521C shows somewhat higher confidence but still falls short of reliable prediction. Because the confidence is below 70% throughout most of the structure, specific claims about how the R521C substitution alters local structure cannot be made with scientific certainty. Clinical and experimental studies provide important context for understanding R521C pathogenicity. This variant is classified as pathogenic by ClinVar with criteria provided by multiple expert submitters, and its extreme rarity in the general population (frequency of 6.84×10⁻⁷, or approximately 1 in 1.5 million chromosomes) strongly supports its disease-causing role [1]. Mouse models carrying the FUS R521C mutation demonstrate that BDNF (brain-derived neurotrophic factor) insufficiency exacerbates disease progression, suggesting that neurotrophic support may be a therapeutic target [4]. Early pathological changes in R521C models include FUS cytoplasmic aggregation and synaptic dysfunction at the neuromuscular junction, which occur before widespread motor neuron death [7]. The R521C mutation fits within broader patterns of FUS-related ALS pathogenesis. Mutations closer to the C-terminus, including R521C, generally correlate with earlier disease onset and more aggressive progression compared to mutations further from the NLS [2][8]. Recent studies suggest that axonal transport impairment may represent an early upstream mechanism in FUS-ALS, contributing to synaptic failure and bioenergetic stress before overt neurodegeneration [5]. Additionally, lipid metabolism alterations have been documented in FUS mutation carriers, including changes in triglycerides and cholesterol that may reflect hypothalamic dysfunction [6]. Given the low structural confidence for this prediction, the primary value lies in confirming FUS's intrinsically disordered character rather than providing specific atomic-level insights into how R521C disrupts function. The pathogenic mechanism is better understood through functional studies showing cytoplasmic mislocalization and aggregation rather than through structural modeling of the mutation site itself. The clinical classification as pathogenic, combined with extreme rarity and functional evidence from model systems, provides strong support that R521C is a disease-causing variant with high but incomplete penetrance [3].

Works Cited

[1] Felice et al. (2026). The Impact of Sponsored Genetic Testing in 170 Consecutive Consenting Patients With Amyotrophic Lateral Sclerosis: A Single-Site Retrospective Review. Muscle & nerve. [PubMed](https://pubmed.ncbi.nlm.nih.gov/42324839/) [2] Sytwu et al. (2026). FUS-associated ALS in Taiwan: genetic spectrum, clinical features, and a founder haplotype of p.H517D. Journal of neurology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/42268433/) [3] Richard et al. (2026). From Mutation to Manifestation: Penetrance in Amyotrophic Lateral Sclerosis. Genes. [PubMed](https://pubmed.ncbi.nlm.nih.gov/42195033/) [4] Xu et al. (2026). BDNF insufficiency exacerbates ALS progression. Cell reports. Medicine. [PubMed](https://pubmed.ncbi.nlm.nih.gov/42013845/) [5] Gabbay et al. (2026). Axonal transport impairment as an upstream mechanism in amyotrophic lateral sclerosis pathogenesis. Frontiers in neuroscience. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41890591/) [6] Krishnamurthy et al. (2026). Disruption of the angiopoietin-like system connects lipid homeostasis and hypothalamic dysfunction in ALS. BMC medicine. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41776545/) [7] Malik et al. (2026). Autophagy induction mitigates FUS aggregate formation and early synaptic dysfunction at the NMJ in the FUS-ALS model. bioRxiv : the preprint server for biology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41756852/) [8] Yu et al. (2025). [Heterogeneity in the regulation of cellular stress responses by FUS gene mutations associated with amyotrophic lateral sclerosis]. Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41656808/)

Similar Research

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03/Research Data

ClinVar Classification

Pathogenic

Review: criteria provided, multiple submitters

Last evaluated: 2026-01-01

Population Frequency

6.84e-07

Extremely rare (<0.01%)

AC: 1 / AN: 1461560

Disease Associations

911 total
sporadic amyotrophic lateral sclerosis
0.72
literature: 0.08 genetic association: 0.97 genetic literature: 0.61
amyotrophic lateral sclerosis
0.71
literature: 1.00 genetic association: 0.87 genetic literature: 0.61
frontotemporal dementia with motor neuron disease
0.67
literature: 0.05 animal model: 0.35 genetic association: 0.94 genetic literature: 0.61
essential tremor
0.56
literature: 0.16 genetic association: 0.76 genetic literature: 0.61
juvenile amyotrophic lateral sclerosis
0.53
literature: 0.70 genetic association: 0.68

Showing 5 of 911 associations

AI Research Brief

# Research Brief: FUS R521C Variant ## Pathogenic Mechanisms The FUS R521C variant represents a pathogenic mutation in the PY-nuclear localization signal (NLS) domain of the FUS protein, a critical RNA-binding protein involved in DNA damage response, transcriptional regulation, and RNA processing. This variant disrupts the normal nuclear import mechanism, leading to cytoplasmic mislocalization and subsequent aggregation of FUS protein. The mutation affects a protein with known functions in chromatin binding, DNA binding, and identical protein binding, while participating in critical biological processes including amyloid fibril formation and membraneless organelle assembly through liquid-liquid phase separation. The R521C substitution compromises the electrostatic interactions necessary for efficient nuclear import mediated by transportin-1, resulting in cytoplasmic accumulation where FUS forms pathological inclusions characteristic of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). The propensity for amyloid fibril formation, combined with impaired nuclear-cytoplasmic trafficking, creates a toxic gain-of-function mechanism that disrupts RNA metabolism and stress granule dynamics. ## Clinical Significance The FUS R521C variant is classified as a moderate-severity mutation associated with ALS/FTD spectrum disorders. Positioned within the critical PY-NLS domain (residues 514-526), this variant represents one of several pathogenic mutations in this region that cause familial ALS with variable penetrance and age of onset. The arginine-to-cysteine substitution at position 521 represents a significant biochemical change, replacing a positively charged, hydrophilic residue with a neutral, sulfur-containing amino acid, fundamentally altering the protein's ability to interact with nuclear import machinery. Clinical manifestations typically include progressive motor neuron degeneration, though phenotypic variability exists among carriers, suggesting potential modifying genetic or environmental factors. ## Therapeutic Landscape Structural analysis has identified a key aggregation hotspot at residues 307-311 (aggregation score: 0.54), representing a promising therapeutic target. The candidate peptide CP-FUS-001 has been computationally designed to specifically target this aggregation-prone region, with the rationale of interfering with pathological FUS self-assembly while preserving normal protein function. This peptide inhibitor approach aims to prevent the formation of cytoplasmic aggregates that characterize FUS proteinopathy. The targeting of residues 307-311 is strategically positioned within the low-complexity domain of FUS, which drives phase separation and aggregation. Current therapeutic strategies would benefit from experimental validation of CP-FUS-001's efficacy in cellular and animal models, alongside exploration of small molecule modulators that could restore nuclear localization or enhance clearance of cytoplasmic FUS aggregates. ## Research Directions Critical knowledge gaps remain regarding genotype-phenotype correlations for R521C compared to other PY-NLS mutations, necessitating comprehensive natural history studies and patient registries. Priority research directions include: (1) validating CP-FUS-001 in patient-derived induced pluripotent stem cells (iPSCs) and neuronal models; (2) investigating whether nuclear import enhancers or autophagy modulators can reduce cytoplasmic FUS burden; (3) characterizing protein-protein interactions disrupted by R521C, particularly with known interactors TARDBP, SAFB, TAF15, RBMX, and RALY; and (4) exploring biomarkers for early detection and progression monitoring in R521C carriers. Additionally, cross-variant comparisons with other FUS mutations could reveal common therapeutic vulnerabilities across the ALS/FTD spectrum.
Last synthesized:

04/AlphaFold Metrics

Sequence coverage plot
Predicted Aligned Error (PAE) plot
pLDDT confidence plot

05/Domain Annotations

Structural Domains & Regions

residues 285–371 Domain — RRM
residues 422–453 Zinc finger — RanBP2-type
residues 1–286 Region — Disordered
residues 375–424 Region — Disordered
residues 444–526 Region — Disordered
residues 1–14 Compositional bias — Polar residues
residues 17–75 Compositional bias — Low complexity
residues 83–164 Compositional bias — Low complexity
residues 165–177 Compositional bias — Gly residues
residues 186–209 Compositional bias — Gly residues
residues 217–232 Compositional bias — Gly residues
residues 244–259 Compositional bias — Gly residues
residues 377–421 Compositional bias — Gly residues
residues 454–468 Compositional bias — Gly residues
residues 469–493 Compositional bias — Basic and acidic residues
residues 494–508 Compositional bias — Gly residues
residues 511–526 Compositional bias — Basic and acidic residues

Binding Partners

TARDBP (9 experiments)
SAFB (8 experiments)
TAF15 (8 experiments)
RBMX (7 experiments)
RALY (6 experiments)
EWSR1 (5 experiments)
PRMT1 (5 experiments)
Smn1 (5 experiments)
EP300 (4 experiments)
PLEC (4 experiments)

Gene Ontology

GABA-ergic synapse GO:0098982 glutamatergic synapse GO:0098978 nucleoplasm GO:0005654 nucleus GO:0005634 postsynaptic cytosol GO:0099524 presynaptic cytosol GO:0099523 chromatin binding GO:0003682 DNA binding GO:0003677 identical protein binding GO:0042802 molecular condensate scaffold activity GO:0140693 mRNA 3'-UTR binding GO:0003730 RNA binding GO:0003723 transcription coactivator activity GO:0003713 transcription coregulator activity GO:0003712 zinc ion binding GO:0008270 +9 more

06/Structural Caption

FUS R521C shows predominantly disordered structure with confined folding in RRM and RanBP2 domains; C-terminal variant disrupts basic residue cluster in disordered RNA-binding region.

Average pLDDT of 50.4 with only 23% high-confidence residues (119/526), indicating a predominantly disordered protein. The RRM domain (residues 285-371) and RanBP2-type domain (residues 422-453) likely represent the primary structured regions.

High-confidence regions correspond to the folded RRM and RanBP2-type domains, while extensive disordered annotations (residues 1-286, 375-424, 444-526) with glycine-rich and low-complexity segments align with low pLDDT scores throughout the N-terminus and C-terminus.

The R521C mutation occurs in the disordered C-terminal region (residues 511-526), replacing a basic arginine with a cysteine near the protein terminus, potentially disrupting electrostatic interactions or RNA-binding properties in this intrinsically disordered segment implicated in ALS pathogenesis.

07/Peptide Therapeutics

Aggregation Analysis

Aggregation propensity analysis identifies 1 hotspots (average score: -0.18) using Pawar+KyteDoolittle+charge algorithm.

Residues 307–311 (0.54)

08/Known Inhibitors

Known Binders from ChEMBL

CHEMBL3752910 Kd: 17.47 nM (pChEMBL 7.76)

CHEMBL3752910

CHEMBL5653589 Kd: 36.62 nM (pChEMBL 7.44)

CHEMBL5653589

09/Candidate Peptides

De Novo Peptide Design Pipeline

Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore8-gate wetlab filterPK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.

Loading candidate statistics...

Sequences are withheld pending IP review. Full candidate data (sequences, scores, CIF files) is available to authorized reviewers via the /api/private/candidates/{fold_id} endpoint with X-Private-Key.

Legacy candidates (charge-complementary)

Target Region

Residues 307–311 (0.54 aggregation score)

Candidate ID

CP-FUS-001 (7 residues · computational design)
✓ Passes drug-likeness filters Stability: low | Toxicity: low
t½ ≈ 6 min renal high ⚙ mods suggested peripheral target

10/Agent Findings

6 findings Last updated:
Literature: 1 Clinical: 1 Structural: 1 Synthesis: 1 Supplements: 1 Peptides: 1

Literature Agent (1)

Literature Agent

These papers have no relevance to understanding the FUS R521C variant associated with ALS/FTD. The collection addresses entirely different medical domains including cerebrovascular disease, dementia prediction algorithms, viral hepatitis immunotherapy, and peripheral vascular physiology, with no overlap to FUS protein biology, RNA-binding protein dysfunction, or motor neuron/frontotemporal degeneration.

Clinical Agent (1)

Clinical Agent

No summary available

Structural Agent (1)

Structural Agent

AlphaFold structure update: Baseline check: 2 structure(s) found

Supplements Agent (1)

Supplements Agent

No supplement, peptide, or nutritional intervention trials or preprints were identified specifically targeting FUS R521C in ALS/FTD. The clinical trials identified are observational natural history studies without therapeutic interventions. The preprints focus on basic science mechanisms of FUS protein aggregation, condensate formation, and structural biology, but none describe supplement or peptide therapeutic development for this specific variant.

Synthesis Agent (1)

Synthesis Agent

Synthesis of 5 findings (clinical, literature, peptides, structural, supplements): The FUS R521C variant represents a moderate-severity mutation in the PY-NLS domain that disrupts nuc...

Peptide Agent (1)

Peptide Agent

FUS R521C: 2 known binders (top: 17.5 nM); 1 candidate peptides designed