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TDP43 M337V

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M337V ALS / FTD Q13148 July 06, 2026
Average Confidence: 65.7%

01/3D Structure

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? About the 3D Viewer

Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.

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What am I looking at?

This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.

Color legend:

The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:

  • Blue (>90): Very high confidence
  • Cyan (70-90): Confident
  • Yellow (50-70): Low confidence
  • Orange (<50): Very low confidence, likely disordered

02/AI Analysis

TLDR

TDP-43 is a protein that normally helps regulate RNA in cells, but when it forms toxic clumps in the brain and spinal cord, it causes ALS (a disease affecting movement) and FTD (a disease affecting behavior and language). This analysis examined the M337V mutation, where methionine at position 337 is replaced by valine, using computer-based structure prediction with moderate confidence (average score 65.7 out of 100). The low confidence scores indicate substantial uncertainty in the predicted structure, limiting definitive conclusions about how this specific mutation alters protein shape and behavior.

Detailed Analysis

TDP-43 (TAR DNA-binding protein 43) is an RNA-binding protein essential for RNA metabolism, splicing, and transport within cells. Under normal conditions, TDP-43 resides primarily in the cell nucleus, but in ALS and FTD, it mislocalizes to the cytoplasm where it forms toxic aggregates that are found in approximately 97% of ALS cases and 45% of FTD cases [4]. The M337V mutation, where methionine at position 337 is replaced by the smaller amino acid valine, is located in the C-terminal domain (CTD), a region critical for protein phase transitions and aggregation behavior [5]. Recent research demonstrates that M337V significantly exacerbates TDP-43 proteotoxicity compared to wild-type protein, increasing oxidative stress and neuronal injury in motor neuron-like cells [1]. This mutation appears to enhance the protein's tendency to undergo aberrant phase transitions, shifting from normal liquid-like assemblies to pathological solid aggregates [3]. The C-terminal alpha-helix region where M337V resides plays a crucial role in coupling condensate formation (normal cellular assemblies) with amyloid assembly (disease-related fibrils), and mutations in this region can uncouple these processes [5]. The AlphaFold2 structure prediction for M337V yielded an average confidence score (pLDDT) of 65.7, which falls into the low-confidence range (below 70). This moderate-to-low confidence reflects the inherent disorder of TDP-43's C-terminal domain, which lacks a stable fixed structure under physiological conditions. The CTD is intrinsically disordered, meaning it exists as an ensemble of flexible conformations rather than a single rigid shape [5]. Therefore, the low confidence scores should be interpreted not as prediction failure, but as accurately capturing the dynamic, disordered nature of this protein region. Definitive structural conclusions about mutation-specific conformational changes cannot be made with confidence at this resolution. The molecular consequences of M337V extend beyond simple structural changes. The mutation occurs in a region where TDP-43 interacts with multiple cellular quality control systems. Studies show that TRIM16, a protein involved in cellular stress responses, is downregulated in cells expressing M337V, leading to impaired activation of antioxidant defenses and increased oxidative injury [1]. Additionally, TDP-43 mutations can influence interactions with other ALS-associated proteins like SOD1, potentially amplifying disease mechanisms through multiple pathways [2]. The mutation's location in the CTD may also affect nuclear-cytoplasmic transport dynamics, which modulate TDP-43's phase behavior and aggregation propensity [3]. Clinically, M337V represents one of several pathogenic variants in TDP-43's C-terminal region associated with familial ALS and FTD. The mutation contributes to the broader landscape of TDP-43 proteinopathies, which also include cases caused by mutations in other genes and sporadic disease. Recent advances in biomarker development, such as CSF acetylated tau measurements, are improving the ability to distinguish between TDP-43 and tau pathology in living patients [4], though direct detection of specific TDP-43 mutations in biofluids remains challenging. Understanding mutation-specific effects like those of M337V may inform future precision medicine approaches, particularly as therapeutic strategies targeting TDP-43 aggregation and phase behavior advance toward clinical testing.

Works Cited

[1] Chen et al. (2026). TRIM16 attenuates TDP43-mediated oxidative injury by coordinating Nrf2 activation and TFR1 autophagic degradation. Free radical biology & medicine. [PubMed](https://pubmed.ncbi.nlm.nih.gov/42092406/) [2] Ribeiro et al. (2026). Molecular Modulation of the Crosstalk Between TDP-43 and SOD1. International journal of molecular sciences. [PubMed](https://pubmed.ncbi.nlm.nih.gov/42074053/) [3] Chin et al. (2026). Nuclear export modulates TDP-43 phase transition and cytoplasmic aggregation. bioRxiv : the preprint server for biology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41993496/) [4] Honey et al. (2026). An acetylated Tau-174 CSF biomarker discriminates between TDP-43 and tau pathology in patients with frontotemporal lobar degeneration. Nature medicine. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41986736/) [5] Byrd et al. (2026). An ALS-associated mutation in the C-terminal alpha-helix of TDP-43 uncouples condensate formation and amyloid assembly. Protein science : a publication of the Protein Society. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41969219/)

Similar Research

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03/Research Data

ClinVar Classification

Not found in ClinVar

Population Frequency

No population data available

Disease Associations

2578 total
amyotrophic lateral sclerosis
0.82
literature: 1.00 animal model: 0.62 genetic association: 0.94 genetic literature: 0.61
frontotemporal dementia with motor neuron disease
0.71
literature: 0.06 animal model: 0.60 genetic association: 0.87 genetic literature: 0.61
familial amyotrophic lateral sclerosis
0.48
literature: 0.12 animal model: 0.56 genetic literature: 0.76
frontotemporal dementia
0.45
literature: 0.99 animal model: 0.49 genetic association: 0.44 genetic literature: 0.61
neurodegenerative disease
0.45
literature: 0.60 affected pathway: 0.72

Showing 5 of 2578 associations

AI Research Brief

Research brief will be generated when agent findings are available.

04/AlphaFold Metrics

Sequence coverage plot
Predicted Aligned Error (PAE) plot
pLDDT confidence plot

05/Domain Annotations

Structural Domains & Regions

residues 104–200 Domain — RRM 1
residues 191–262 Domain — RRM 2
residues 216–414 Region — Interaction with UBQLN2
residues 261–303 Region — Disordered
residues 341–373 Region — Disordered
residues 82–98 Motif — Nuclear localization signal
residues 239–250 Motif — Nuclear export signal
residues 261–274 Compositional bias — Basic and acidic residues
residues 275–303 Compositional bias — Gly residues
residues 342–358 Compositional bias — Low complexity

Binding Partners

PPP1R15A (10 experiments)
FUS (9 experiments)
OTUB1 (8 experiments)
ELAVL1 (7 experiments)
GNB2 (7 experiments)
HNRNPH1 (7 experiments)
XRN2 (7 experiments)
ANXA8 (6 experiments)
AP2B1 (6 experiments)
APP (6 experiments)

Gene Ontology

chromatin GO:0000785 cytoplasmic stress granule GO:0010494 interchromatin granule GO:0035061 mitochondrion GO:0005739 nuclear speck GO:0016607 nucleoplasm GO:0005654 nucleus GO:0005634 perichromatin fibrils GO:0005726 DNA binding GO:0003677 double-stranded DNA binding GO:0003690 identical protein binding GO:0042802 lipid binding GO:0008289 molecular condensate scaffold activity GO:0140693 mRNA 3'-UTR binding GO:0003730 pre-mRNA intronic binding GO:0097157 +20 more

06/Structural Caption

TDP43 M337V structure showing well-folded RRM domains (pLDDT >70) and disordered C-terminal prion-like region where the M337V variant resides (average pLDDT 65.7).

Average pLDDT of 65.7 with 55% high-confidence residues indicates moderate overall structural confidence. Key destabilized regions include the disordered C-terminal domain (residues 261-414) and linker regions between structured RRM domains.

The two RNA recognition motifs (RRM1: 104-200, RRM2: 191-262) show highest confidence and form the structured core. The extensive C-terminal low-complexity region (residues 261-414), including the UBQLN2 interaction domain, glycine-rich tract, and prion-like domain, exhibits low confidence consistent with intrinsic disorder.

The M337V substitution occurs within the intrinsically disordered C-terminal region (residue 337 falls between disordered segments 261-303 and 341-373), likely altering aggregation propensity in the prion-like domain without disrupting the structured RRM cores.

07/Peptide Therapeutics

Aggregation Analysis

Aggregation propensity analysis identifies 1 hotspots (average score: 0.00) using Pawar+KyteDoolittle+charge algorithm.

Residues 228–232 (0.71)

08/Known Inhibitors

Known Binders from ChEMBL

CHEMBL4635203 IC50: 100.0 nM (pChEMBL 7.0)

CHEMBL4635203

CHEMBL5653589 Kd: 175.99 nM (pChEMBL 6.75)

CHEMBL5653589

CHEMBL3752910 Kd: 813.51 nM (pChEMBL 6.09)

CHEMBL3752910

CHEMBL58 IC50: 10000.0 nM (pChEMBL 5.0)

MITOXANTRONE

CHEMBL1403899 IC50: 19952.62 nM (pChEMBL 4.7)

THIOCTIC ACID AMIDE

CHEMBL134342 IC50: 19952.62 nM (pChEMBL 4.7)

THIOCTIC ACID

CHEMBL4638490 Kd: 89000.0 nM (pChEMBL 4.05)

CHEMBL4638490

09/Candidate Peptides

De Novo Peptide Design Pipeline

Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.

Loading candidate statistics...

Sequences are withheld pending IP review. Full candidate data (sequences, scores, CIF files) is available to authorized reviewers via the /api/private/candidates/{fold_id} endpoint with X-Private-Key.

Legacy candidates (charge-complementary)

Target Region

Residues 228–232 (0.71 aggregation score)

Candidate ID

CP-TDP43-001 (7 residues · computational design)
âš  Drug-likeness concerns Stability: medium | Toxicity: low
t½ ≈ 1 min renal high ⚙ mods suggested peripheral target

10/Agent Findings

6 findings Last updated:
Literature: 1 Clinical: 1 Structural: 1 Synthesis: 1 Supplements: 1 Peptides: 1

Literature Agent (1)

Literature Agent

None of the papers directly address the TDP43 M337V variant. The papers focus on other genetic causes of ALS/FTD (C9orf72, CHCHD10, SOD1) and general TDP-43 pathology, but do not mention the M337V mutation in TARDBP. While they provide valuable context about TDP-43 proteinopathy mechanisms and biomarkers relevant to ALS/FTD broadly, they lack specific relevance to understanding the M337V variant's pathogenic effects or clinical characteristics.

Clinical Agent (1)

Clinical Agent

No summary available

Structural Agent (1)

Structural Agent

AlphaFold structure update: Baseline check: 2 structure(s) found

Supplements Agent (1)

Supplements Agent

The therapeutic landscape for TDP-43 M337V in ALS/FTD shows limited but emerging supplement and peptide interventions. One recruiting trial tests probiotics targeting metabolic pathways in ALS-FTD spectrum disorders. Recent preprints identify TDP-43 aggregation inhibitors and nutritional interventions like caloric restriction that show neuroprotective effects, suggesting potential dietary and peptide-based therapeutic strategies are in early research stages.

Synthesis Agent (1)

Synthesis Agent

Synthesis of 5 findings (clinical, literature, peptides, structural, supplements): The TDP43 M337V variant associated with ALS/FTD presents a mixed therapeutic landscape with emerging...

Peptide Agent (1)

Peptide Agent

TDP43 M337V: 7 known binders (top: 100.0 nM); 1 candidate peptides designed