01/3D Structure
? About the 3D Viewer
Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.
Controls:
- Rotate: Click and drag
- Zoom: Scroll wheel or pinch
- Pan: Right-click and drag (or two-finger drag)
- Reset: Double-click to reset view
What am I looking at?
This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.
Color legend:
The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:
- Blue (>90): Very high confidence
- Cyan (70-90): Confident
- Yellow (50-70): Low confidence
- Orange (<50): Very low confidence, likely disordered
02/AI Analysis
TLDR
Tau is a protein that normally stabilizes the internal scaffolding of brain cells, but in Alzheimer's disease it forms toxic clumps that destroy neurons. The P301L mutation, which changes one building block in the tau protein, is known to cause inherited forms of dementia by accelerating this clumping process. Computational structure prediction of tau with the P301L mutation yielded very low confidence scores (average 55.0 out of 100), indicating that tau's inherently flexible, disordered nature makes it extremely difficult to predict its three-dimensional structure reliably.
Detailed Analysis
Works Cited
Similar Research
03/Research Data
ClinVar Classification
Review: criteria provided, multiple submitters
Last evaluated: 2026-01-01
Population Frequency
No population data available
Disease Associations
3349 totalShowing 5 of 3349 associations
AI Research Brief
04/AlphaFold Metrics
05/Domain Annotations
Structural Domains & Regions
Binding Partners
Gene Ontology
06/Structural Caption
TAU P301L (P10636) exhibits low overall confidence (pLDDT 55.0) with intrinsic disorder dominating outside the microtubule-binding domain, where the pathogenic P301L mutation localizes.
Average pLDDT is 55.0, with only 18% (65/352 residues) achieving high confidence (pLDDT ≥70). The structure is predominantly low confidence, consistent with extensive intrinsic disorder throughout the N-terminus (residues 1-573) and C-terminus (residues 715-734).
The microtubule-binding domain (residues 561-685), comprising four Tau/MAP repeats, shows relatively higher confidence compared to the highly disordered N- and C-terminal projection domains. Low complexity and charged residue regions (residues 1-466) remain largely unstructured, reflecting TAU's characteristic intrinsically disordered nature.
The P301L mutation at the boundary between Tau/MAP repeats 2 and 3 disrupts proline-mediated structural constraints in the microtubule-binding region, potentially altering repeat domain packing and promoting pathological aggregation associated with frontotemporal dementia.
07/Peptide Therapeutics
Aggregation Analysis
Aggregation propensity analysis identifies 1 hotspots (average score: -0.19) using Pawar+KyteDoolittle+charge algorithm.
08/Known Inhibitors
Known Binders from ChEMBL
09/Candidate Peptides
De Novo Peptide Design Pipeline
Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.
Loading candidate statistics...
Sequences are withheld pending IP review. Full candidate data (sequences,
scores, CIF files) is available to authorized reviewers via the
/api/private/candidates/{fold_id} endpoint with
X-Private-Key.
Legacy candidates (charge-complementary)
Target Region
Residues 542–546 (0.60 aggregation score)Candidate ID
CP-TAU-001
(7 residues · computational design)
10/Agent Findings
Literature Agent (1)
Only one paper (DOI 10.64898/2026.07.03.736394) directly examines the P301L tau variant and its effects on synaptic function and neurodegeneration. This paper is highly relevant as it provides molecular-level insights into how this specific pathogenic mutation disrupts presynaptic transmission dynamics, offering mechanistic understanding of early disease processes in P301L-associated tauopathies and frontotemporal dementia.
Clinical Agent (1)
No summary available
Structural Agent (1)
AlphaFold structure update: Baseline check: 9 structure(s) found
Supplements Agent (1)
The therapeutic landscape for tau P301L in AD includes primarily early-phase nutritional and supplement interventions. Melatonin (Phase unspecified, NCT03954899) targets tau biomarkers in CSF with a 9-month trial design. Silkworm pupa powder represents a novel protein-based nutritional intervention in two trials (NCT06770309, NCT07638449) targeting cognitive decline and tau-related pathology. Tricaprilin, a medium-chain triglyceride, is advancing to Phase 3 (NCT05809908) for mild-to-moderate AD. Peptide-based approaches remain preclinical, with high-throughput screening identifying tau-LRP1 inhibitors and CAPON-targeting cyclic peptides in development.
Synthesis Agent (1)
Synthesis of 1 findings (peptides): The TAU P301L variant, associated with Alzheimer's disease, shows promising druggability with 10 kno...
Peptide Agent (1)
TAU P301L: 10 known binders (top: 0.5 nM); 1 candidate peptides designed