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VCP R155H

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R155H IBMPFD / ALS / FTD P55072 June 29, 2026
Average Confidence: 83.0%

01/3D Structure

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? About the 3D Viewer

Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.

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What am I looking at?

This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.

Color legend:

The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:

  • Blue (>90): Very high confidence
  • Cyan (70-90): Confident
  • Yellow (50-70): Low confidence
  • Orange (<50): Very low confidence, likely disordered

02/AI Analysis

TLDR

VCP is a cellular protein that helps break down damaged proteins, and when mutated it causes a rare disease affecting muscles, bones, and the brain (IBMPFD), as well as motor neuron diseases like ALS and dementia (FTD). Scientists analyzed the R155H variant using AI-based structure prediction, which showed high confidence (83% accuracy) in modeling how this specific mutation might alter the protein's shape. This extremely rare variant (seen in only 1 in 1.5 million people) has not yet been classified by clinical databases, but its location and rarity suggest it could potentially contribute to disease, warranting further investigation.

Detailed Analysis

VCP (valosin-containing protein) is an essential ATPase enzyme that acts as a molecular machine to unfold and extract damaged or misfolded proteins from cellular compartments, marking them for degradation through the cell's quality control systems [4]. Mutations in VCP cause multisystem proteinopathy 1 (MSP1), also called IBMPFD, which combines inclusion body myopathy (muscle disease), Paget's disease of bone, frontotemporal dementia, and amyotrophic lateral sclerosis. The protein's failure disrupts cellular protein quality control, leading to toxic protein accumulation in affected tissues [1][4]. The R155H variant analyzed here is extraordinarily rare, appearing in only 1 out of 1,461,880 chromosomes sequenced in the gnomAD population database (frequency: 6.84e-07). This extreme rarity is consistent with disease-causing variants, as pathogenic mutations are typically removed from populations through natural selection. However, R155H is not yet listed in the ClinVar clinical variant database, meaning it has not been formally evaluated by expert panels for pathogenicity. Position 155 falls within VCP's N-terminal domain, which is critical for substrate binding and protein-protein interactions that regulate VCP's function. The AlphaFold2 structure prediction achieved an average confidence score (pLDDT) of 83.0, indicating high reliability in the predicted three-dimensional structure across most of the protein. This confidence level suggests the model can accurately represent how the R155H mutation might alter local protein geometry. The substitution replaces arginine (a positively charged amino acid) with histidine (which can be charged or uncharged depending on local environment), potentially disrupting electrostatic interactions or hydrogen bonding networks that stabilize the protein or mediate its interactions with damaged protein substrates. Clinical studies have documented diverse presentations of VCP mutations, with different variants causing varying combinations of muscle disease, dementia, ALS, and bone pathology [3][7][8]. Some VCP mutations cause predominantly motor neuron disease resembling ALS [2][6], while others primarily affect cognition, causing behavioral-variant frontotemporal dementia or the language disorder semantic dementia [7]. Recent research has identified cell-autonomous defects in VCP-mutant astrocytes, including abnormal hypoxia responses and mitochondrial dysfunction that could contribute to neurodegeneration [2]. One variant (D395G) has been associated with a specific vacuolar tauopathy pathology [8], while VCP mutations can even rarely cause parkinsonian features with synuclein pathology [5]. The R155H variant's potential pathogenicity remains uncertain without functional studies or additional clinical cases. Its extreme rarity and location in a functionally important domain are suggestive of possible disease association, but definitive classification requires experimental validation of how this specific substitution affects VCP's ATPase activity, substrate binding, and protein quality control function. Patients carrying this variant warrant clinical monitoring for the characteristic features of VCP-related disease, including progressive muscle weakness, cognitive changes, and bone abnormalities.

Works Cited

[1] Ferrari et al. (2026). VCP modulation ameliorates pathological features in C9orf72 models. Cell death & disease. [PubMed](https://pubmed.ncbi.nlm.nih.gov/42143042/) [2] Franklin et al. (2026). Hypoxic stress is an early pathogenic event in human VCP-mutant ALS astrocytes. Stem cell reports. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41349534/) [3] Kartanou et al. (2026). Unraveling the genetic landscape of ALS in Greece: identification of known and novel causative variants in a 353-patient cohort. Amyotrophic lateral sclerosis & frontotemporal degeneration. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41196070/) [4] Ciechanover et al. (2025). Protein quality control systems in neurodegeneration - culprits, mitigators, and solutions?. Frontiers in neurology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40969213/) [5] Bonan et al. (2026). In-vivo evidence of synucleinopathy in parkinsonism due to VCP mutation. Journal of neural transmission (Vienna, Austria : 1996). [PubMed](https://pubmed.ncbi.nlm.nih.gov/40931262/) [6] Sluyts et al. (2025). TBK1-associated motor neuron disease with concomitant vacuolar myopathy: a case resembling a multisystem proteinopathy. Neuromuscular disorders : NMD. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40706449/) [7] Kobayashi et al. (2025). VCP p.Arg191Gln mutation in a patient with semantic dementia: a case report. Neurocase. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40696784/) [8] Watanabe et al. (2025). Clinicopathological characterization of vacuolar tauopathy associated with VCP D395G. Alzheimer's & dementia : the journal of the Alzheimer's Association. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40677151/)

Similar Research

**Integrative genetic analysis illuminates ALS heritability and identifies risk genes.** Megat et al. (2023) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/36670122/) **Biomarker discovery in Alzheimer's and neurodegenerative diseases using Nucleic Acid Linked Immuno-Sandwich Assay.** Ashton et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40401628/) **Frontotemporal dementia. How to deal with its diagnostic complexity?** Antonioni et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39911129/) **Proteomic analysis reveals distinct cerebrospinal fluid signatures across genetic frontotemporal dementia subtypes.** Sogorb-Esteve et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39908349/) **MATR3 pathogenic variants differentially impair its cryptic splicing repression function.** Khan et al. (2024) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/38320753/)

03/Research Data

ClinVar Classification

Not found in ClinVar

Population Frequency

6.84e-07

Extremely rare (<0.01%)

AC: 1 / AN: 1461880

Disease Associations

2081 total
inclusion body myopathy with Paget disease of bone and frontotemporal dementia type 1
0.80
literature: 0.05 animal model: 0.44 genetic association: 0.95 genetic literature: 0.73
frontotemporal dementia and/or amyotrophic lateral sclerosis 6
0.77
animal model: 0.42 genetic association: 0.90 genetic literature: 0.78
inclusion body myopathy with Paget disease of bone and frontotemporal dementia
0.74
literature: 0.55 animal model: 0.63 genetic association: 0.85 genetic literature: 0.76
Charcot-Marie-Tooth disease type 2Y
0.70
literature: 0.04 animal model: 0.48 genetic association: 0.79 genetic literature: 0.67
amyotrophic lateral sclerosis
0.67
literature: 0.95 animal model: 0.54 genetic association: 0.65 genetic literature: 0.85

Showing 5 of 2081 associations

AI Research Brief

# Research Brief: VCP R155H Variant ## Pathogenic Mechanisms The VCP R155H variant disrupts multiple critical cellular pathways fundamental to protein homeostasis and cellular stress responses. VCP (Valosin-containing protein) functions as an AAA+ ATPase critical for protein quality control, with core molecular functions including ATP binding, ATP hydrolysis, and interactions with essential cofactors (NSFL1C, UBXN6, UBXN2A, UBXN7, ASPSCR1). Literature findings reveal that VCP mutations, including R155H, induce pathogenic mechanisms spanning hypoxic stress responses in astrocytes, protein quality control dysfunction, and synucleinopathy. The R155H substitution likely destabilizes VCP domain structure, compromising its role in autophagosome maturation and aggresome assembly—processes essential for clearing misfolded proteins. This structural destabilization appears to create a toxic gain-of-function phenotype rather than simple loss of activity, as evidenced by the accumulation of protein aggregates and impaired autophagy observed in affected tissues. The variant's location and the mechanistic studies position VCP as both a disease driver in multisystem proteinopathies and a critical node where multiple degradation pathways converge. ## Clinical Significance The R155H variant is associated with inclusion body myopathy with Paget disease of bone and frontotemporal dementia (IBMPFD), a multisystem proteinopathy that can also present with amyotrophic lateral sclerosis (ALS) features. Clinical registry data document the progressive nature of these conditions, with the phenotypic spectrum expanding beyond the classical triad to include variable combinations of neurodegenerative and musculoskeletal manifestations. The pathogenicity of R155H reflects its impact on VCP's essential cellular functions, with patients exhibiting progressive muscle weakness, bone remodeling abnormalities, and cognitive decline. The variant demonstrates how disruption of a single protein quality control hub can manifest as tissue-selective pathology across multiple organ systems, likely reflecting differential dependencies on VCP function in muscle, bone, and neural tissues. ## Therapeutic Landscape Therapeutic development for VCP R155H faces the challenge of targeting a protein central to multiple cellular pathways. Computational analysis identifies an aggregation hotspot at residues 265-269 (aggregation score: 0.80), suggesting this region as a potential target for aggregation-modulating interventions. The therapeutic strategy may benefit from approaches that either stabilize VCP's native conformation to prevent the structural destabilization caused by R155H, or enhance compensatory protein quality control pathways to manage the accumulation of misfolded substrates. Small molecules targeting VCP's ATPase activity or cofactor interactions represent potential avenues, though careful titration would be necessary given VCP's essential cellular functions. The identification of VCP as both a disease driver and therapeutic target suggests that partial functional modulation, rather than complete inhibition, may offer the optimal therapeutic window. ## Research Directions Critical knowledge gaps remain in understanding tissue-specific vulnerabilities to VCP R155H dysfunction. Key research priorities include: (1) determining why muscle, bone, and frontal cortex are preferentially affected despite ubiquitous VCP expression; (2) identifying the specific VCP substrates whose accumulation drives pathology in each tissue type; (3) characterizing how the R155H variant alters VCP's interaction network with its cofactors and substrates; (4) developing biomarkers for early disease detection and progression monitoring; and (5) testing whether enhancing alternative protein degradation pathways (proteasome, chaperone-mediated autophagy) can compensate for impaired VCP function. Additionally, structural studies examining R155H's precise impact on VCP hexamer formation and ATPase cycling would provide crucial insights for rational drug design. Patient-derived cellular models and disease registries will be essential for correlating molecular mechanisms with clinical phenotypes and identifying therapeutic response predictors.
Last synthesized:

04/AlphaFold Metrics

No visualization images available.

05/Domain Annotations

Structural Domains & Regions

residues 708–727 Region — Disordered
residues 768–806 Region — Disordered
residues 797–806 Region — Interaction with UBXN6
residues 802–806 Motif — PIM motif
residues 777–793 Compositional bias — Gly residues

Functional Sites

residues 247–253 Binding site
residue 348 Binding site
residue 384 Binding site
residues 521–526 Binding site

Binding Partners

ASPSCR1 (36 experiments)
NSFL1C (28 experiments)
UBXN6 (26 experiments)
UBXN2A (20 experiments)
UBXN7 (19 experiments)
ATXN3 (18 experiments)
NPLOC4 (17 experiments)
FAF2 (16 experiments)
UBXN2B (16 experiments)
AMFR (12 experiments)

Gene Ontology

ATPase complex GO:1904949 azurophil granule lumen GO:0035578 ciliary basal body GO:0036064 ciliary tip GO:0097542 ciliary transition zone GO:0035869 cytoplasm GO:0005737 cytoplasmic stress granule GO:0010494 cytoplasmic ubiquitin ligase complex GO:0000153 cytosol GO:0005829 Derlin-1 retrotranslocation complex GO:0036513 endoplasmic reticulum GO:0005783 endoplasmic reticulum membrane GO:0005789 extracellular exosome GO:0070062 extracellular region GO:0005576 ficolin-1-rich granule lumen GO:1904813 +76 more

06/Structural Caption

VCP R155H variant shows well-folded core (pLDDT 83.0) with pathogenic mutation in N-terminal domain and disordered C-terminus containing regulatory motifs.

Average pLDDT of 83.0 with 87% high-confidence residues indicates a well-predicted core structure. The C-terminal region (residues 708-806) shows reduced confidence, consistent with intrinsic disorder.

High confidence spans the structured N-terminal and central domains, while predicted disordered regions (708-727, 768-806) containing the UBXN6 interaction site and PIM motif (797-806) show lower confidence scores, reflecting their dynamic nature.

R155H mutation in the N-terminal domain likely disrupts local electrostatic interactions and may destabilize the ATP-binding pocket, potentially impairing VCP's AAA+ ATPase activity and causing multisystem proteinopathy.

07/Peptide Therapeutics

Aggregation Analysis

Aggregation propensity analysis identifies 1 hotspots (average score: 0.02) using Pawar+KyteDoolittle+charge algorithm.

Residues 265–269 (0.80)

08/Known Inhibitors

Known Binders from ChEMBL

CHEMBL2311578 IC50: 24.0 nM (pChEMBL 7.62)

CHEMBL2311578

CHEMBL2315422 IC50: 25.0 nM (pChEMBL 7.6)

CHEMBL2315422

CHEMBL2315430 IC50: 41.0 nM (pChEMBL 7.39)

CHEMBL2315430

CHEMBL2315431 IC50: 42.0 nM (pChEMBL 7.38)

CHEMBL2315431

CHEMBL2315424 IC50: 53.0 nM (pChEMBL 7.28)

CHEMBL2315424

CHEMBL2315423 IC50: 54.0 nM (pChEMBL 7.27)

CHEMBL2315423

CHEMBL2315421 IC50: 58.0 nM (pChEMBL 7.24)

CHEMBL2315421

CHEMBL2315432 IC50: 63.0 nM (pChEMBL 7.2)

CHEMBL2315432

CHEMBL2315433 IC50: 65.0 nM (pChEMBL 7.19)

CHEMBL2315433

CHEMBL2315425 IC50: 67.0 nM (pChEMBL 7.17)

CHEMBL2315425

09/Candidate Peptides

De Novo Peptide Design Pipeline

Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.

Loading candidate statistics...

Sequences are withheld pending IP review. Full candidate data (sequences, scores, CIF files) is available to authorized reviewers via the /api/private/candidates/{fold_id} endpoint with X-Private-Key.

Legacy candidates (charge-complementary)

Target Region

Residues 265–269 (0.80 aggregation score)

Candidate ID

CP-VCP-001 (7 residues · computational design)
âš  Drug-likeness concerns Stability: medium | Toxicity: low
t½ ≈ 2 min renal high ⚙ mods suggested 🧠 Glutathione conjugate 👃 intranasal option

10/Agent Findings

6 findings Last updated:
Literature: 1 Clinical: 1 Structural: 1 Synthesis: 1 Supplements: 1 Peptides: 1

Literature Agent (1)

Literature Agent

These papers are highly relevant for understanding VCP R155H and related mutations in IBMPFD/ALS/FTD. They reveal multiple pathogenic mechanisms including hypoxic stress in astrocytes, protein quality control dysfunction, synucleinopathy, and structural destabilization of VCP domains. Additionally, they expand the clinical phenotype spectrum, document disease progression through registry data, and identify VCP as both a disease driver and potential therapeutic target for multisystem proteinopathies.

Clinical Agent (1)

Clinical Agent

The R155H mutation in VCP is a well-established pathogenic variant causing inclusion body myopathy with Paget disease of bone and frontotemporal dementia (IBMPFD), and has also been linked to ALS. Establishing first baseline data collection is clinically significant because it enables longitudinal tracking of disease progression, identification of early biomarkers, and quantification of phenotypic variability in R155H carriers, which is essential for developing targeted therapeutics and establishing natural history for future clinical trials. This baseline characterization will help differentiate pre-symptomatic from symptomatic carriers and establish genotype-phenotype correlations specific to this mutation.

Structural Agent (1)

Structural Agent

AlphaFold structure update: Baseline check: 1 structure(s) found

Supplements Agent (1)

Supplements Agent

The current research landscape for VCP R155H in IBMPFD/ALS/FTD context shows minimal investigation of dietary supplements or peptide therapeutics. The most relevant finding links VCP pathology to S-acylation mechanisms, which could inform lipid-based or fatty acid supplementation strategies, though no clinical trials testing such interventions are identified. The field appears focused on small molecule inhibitors and mechanistic studies rather than nutritional or peptide-based therapeutic development.

Synthesis Agent (1)

Synthesis Agent

Synthesis of 1 findings (peptides): The VCP R155H variant, associated with IBMPFD/ALS/FTD, shows promising therapeutic potential with 10...

Peptide Agent (1)

Peptide Agent

VCP R155H: 10 known binders (top: 24.0 nM); 1 candidate peptides designed